Multiple Sequence Alignment - Methods and Protocols

di Springer US
Stato: Nuovo
119,49 €
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Springer US Multiple Sequence Alignment - Methods and Protocols
Springer US - Multiple Sequence Alignment - Methods and Protocols

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Stato: Nuovo
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Consegna: tra martedì 5 luglio 2022 e giovedì 7 luglio 2022
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Descrizione

Chapter “Alignment of Biological Sequences with Jalview” is available open access under a Creative Commons Attribution 4.0 International License via link.springer.com.

Ulteriori informazioni

Illustrations Note:
22 SW-Abb., 90 Farbabb.
Lingua:
Inglese
Indice:
Preface…Table of Contents…Contributing Authors…
Part I Basic Tools for Computing MSAa
1. The Clustal Omega Multiple Alignment PackageFabian Sievers and Desmond G. Higgins
2. Phylogeny-Aware Alignment with PRANK and PAGANAri Löytynoja
3. Fast and Accurate Multiple Sequence Alignment with MSAProbs-MPIJorge González-Domínguez
Part II Tools for Specific MSA ProblemsHandling DNA/Protein Sequences Simultaneously
4. Aligning Protein-Coding Nucleotide Sequences with MACSEVincent Ranwez, Nathalie Chantret, and Frédéric Delsuc
5. Cooperation of Spalm and Prrn5 for Construction of Gene-Structure-Aware Multiple Sequence AlignmentOsamu Gotoh
Large Number of Sequences
6. Multiple Sequence Alignment Computation using the T-Coffee Regressive Algorithm ImplementationEdgar Garriga, Paolo Di Tommaso, Cedrik Magis, Ionas Erb, Leila Mansouri, Athanasios Baltzis, Evan Floden, and Cedric Notredame
7. Multiple Sequence Alignment for Large Heterogeneous Datasets using SATé, PASTA, and UPPTandy Warnow and Siavash Mirarab
8. Sequence Comparison without Alignment: The SpaM ApproachesBurkhard Morgenstern
Unreliable Data
9. Lamassemble: Multiple Alignment and Consensus Sequence of Long ReadsMartin C. Frith, Satomi Mitsuhashi, and Kazutaka Katoh
10. Automated Removal of Non-Homologous Sequence Stretches with PREQUALIker Irisarri, Fabien Burki, and Simon Whelan
Protein Structures
11. Analysis of Protein Intermolecular Interaction with MAFFT-DASHJohn Rozewicki, Songling Li, Kazutaka Katoh, and Daron M. Standley
12. Mustguseal and Sister Web-Methods: A Practical Guide to Bioinformatic Analysis of Protein SuperfamiliesDmitry Suplatov, Yana Sharapova, and Vytas Švedas
Part III Visualization
13. Alignment of Biological Sequences with JalviewJames B. Procter, G. Mungo Carstairs, Ben Soares, Kira Mourão, T. Charles Ofoegbu, Daniel Barton, Lauren Lui, Anne Menard, Natasha Sherstnev, David Roland-Martinez, Suzanne Duce, David M.A. Martin, and Geoffrey J. Marton
14. Evolutionary Sequence Analysis and Visualization with WasabiAndres Veidenberg and Ari Löytynoja
15. Seaview Version 5: A Multiplatform Software for Multiple Sequence Alignment, Molecular Phylogenetic Analyses, and Tree ReconciliationManolo Gouy, Eric Tannier, Nicolas Comte, and David Parsons
16. NCBI Genome Workbench: Desktop Software for Comparative Genomics, Visualization, and GenBank Data SubmissionAnatoliy Kuznetsov and Colleen J. Bollin
Part IV Open Problems
17. Revisiting Evaluation of Multiple Sequence Alignment MethodsTandy Warnow
Subject Index List…
Edizione:
1st ed. 2021
Numero di Pagine:
321
Editore:
Katoh, Kazutaka;Katoh
Commenti:
Includes cutting-edge methods and protocols


Provides step-by-step detail essential for reproducible results


Contains keynotes and implementation advice from the experts

Tipo multimediale:
Copertina morbida
Editore:
Springer US

Dati Principali

Tipologia prodotto:
Brossura
Data di pubblicazione:
9 dicembre 2020
Dimensioni del collo:
0.254 x 0.178 x 0.02 m; 0.739 kg
GTIN:
09781071610381
DUIN:
EVHQEULN4TS
119,49 €
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